Remove Redundant Transcripts
Usage
remove_redundants(
data_matrix,
enst_ensp_sequences,
mane_select = NULL,
peptide_lengths = NULL
)Arguments
- data_matrix
Bulk RNA Seq expression matrix from samples, columns are samples and first row is gene ids, second row is transcript ids and the rest of the rows are samples
- enst_ensp_sequences
amino acid sequence of each ensp
- mane_select
mane transcript list is needed to decide which transcript will be kept